Evaluation of antibiotic resistance and biofilm production in Escherichia coli isolated from clinical samples in Kirkuk city

Authors

DOI:

https://doi.org/10.56286/z1c12p09

Keywords:

Escherichia coli, Biofilm, Antibiotic resistance, Kirkuk city

Abstract

Escherichia coli (E. coli) is a prominent etiological cause of bacterial infections. Biofilms form when cells are embedded within a matrix of extracellular polymeric substances that bond to each other or to either inert or living surfaces. It increases antibiotic resistance by maintaining cells. The study aims to determine the biofilm formation and antibiotic susceptibility patterns of E. coli isolates. A total of 200 clinical samples were collected from Kirkuk city hospitals, including urine, sputum, wound, and burn swabs. Forty isolates were classified as E. coli.  An antibiotic sensitivity test was conducted using the disc diffusion method with fourteen antibiotic discs. A microtiter plate method was used to detect biofilm.  The study revealed antibiotic resistance rates against Ceftriaxone 33 (82.5%), Ceftazidime and Trimethoprim-sulfamethoxazole 32 (80%), Tetracycline 28 (70%), Cefepime 27 (67.5%), Ciprofloxacin and Aztreonam 32 (57.5%), Amoxicillin-clavulanate 12 (30%), and Piperacillin-tazobactam 11 (27.5%). The most effective antibiotics were nitrofurantoin, meropenem, imipenem, chloramphenicol, and gentamycin, with susceptibilities (100%, 90%, 85%, 85%, 75%), respectively. The biofilm production of the E. coli isolates ranged from weak 30 (75%) to moderate 9 (22.5%), and strong 1 (2.5%). The study concluded that all antibiotic-resistant isolates were biofilm producers.

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References

Riedel, S. et al. (2019) Jawetz Melnick & Adelbergs Medical Microbiology 28 E. McGraw Hill LLC. Available at: https://books.google.iq/books?id=1dSWDwAAQBAJ.

Kaper, J.B., Nataro, J.P. and Mobley, H.L.T. (2004) ‘Pathogenic Escherichia coli’, Nature Reviews Microbiology, 2(2), pp. 123–140. Available at: https://doi.org/10.1038/nrmicro818.

Makvana, S. and Krilov, L.R. (2015) ‘Escherichia coli Infections’, Pediatrics in Review, 36(4), pp. 167–171. Available at: https://doi.org/10.1542/pir.36-4-167.

O.M. Al-Dahmoshi, H., S.K. Al-Khafaji, N. and H.O. Al-Allak, M. (2020) ‘ Antibiotic Resistance among Iraqi Local E. coli Isolates ’, E. Coli Infections - Importance of Early Diagnosis and Efficient Treatment [Preprint], (May). Available at: https://doi.org/10.5772/intechopen.92107.

Sarowska, J. et al. (2019) ‘Virulence factors, prevalence and potential transmission of extraintestinal pathogenic Escherichia coli isolated from different sources: Recent reports’, Gut Pathogens, 11(1), pp. 1–16. Available at: https://doi.org/10.1186/s13099-019-0290-0.

Galindo-méndez, M. (2020) ‘Antimicrobial Resistance in Escherichia coli’. Available at: http://dx.doi.org/10.5772/intechopen.93115.

Catalano, A. et al. (2022) ‘Multidrug Resistance (MDR): A Widespread Phenomenon in Pharmacological Therapies’, Molecules, 27(3), pp. 1–18. Available at: https://doi.org/10.3390/molecules27030616.

Ballén, V. et al. (2022) ‘Clinical Escherichia coli: From Biofilm Formation to New Antibiofilm Strategies’, Microorganisms, 10(6). Available at: https://doi.org/10.3390/microorganisms10061103.

Lerch, T.Z. et al. (2017) ‘Biofilm vs. Planktonic Lifestyle: Consequences for Pesticide 2,4-D Metabolism by Cupriavidus necator JMP134’, Frontiers in Microbiology, 8(MAY), pp. 1–11. Available at: https://doi.org/10.3389/fmicb.2017.00904.

Høiby, N. et al. (2010) ‘Antibiotic resistance of bacterial biofilms’, International Journal of Antimicrobial Agents, 35(4), pp. 322–332. Available at: https://doi.org/https://doi.org/10.1016/j.ijantimicag.2009.12.011.

González, J.F., Hahn, M.M. and Gunn, J.S. (2018) ‘Chronic biofilm-based infections: Skewing of the immune response’, Pathogens and Disease, 76(3), pp. 1–7. Available at: https://doi.org/10.1093/femspd/fty023.

Hudzicki, J. (2012) ‘Kirby-Bauer Disk Diffusion Susceptibility Test Protocol Author Information’, American Society For Microbiology, (December 2009), pp. 1–13. Available at: https://www.asm.org/Protocols/Kirby-Bauer-Disk-Diffusion-Susceptibility-Test-Pro.

Flamerz, R. A., Obid, S., and Jasim, W. M. (2023) Study the Effect of Biofilm Production on Antibiotic Resistance in Proteus mirabilis Isolated from Clinical Samples in Kirkuk City, NTU Journal of Pure Sciences, 2(1). Available at: https://doi.org/10.56286/ntujps.v2i1.339.

Noori, A.A. (2023) ?The Identification of Virulence Factors Genes Of Escherichia coli IsolateFrom Different Sources. University of Tikrit / college of Science.( Master’s Thesis)

Flores-Mireles, A.L. et al. (2015) ‘Urinary tract infections: epidemiology, mechanisms of infection and treatment options’, Nature reviews microbiology, 13(5), pp. 269–284. Available at: https://doi.org/10.1038/nrmicro3432.

Hussein, K.A. and Hussein, A.N. (2022) ‘Phenotypic and genotypic characterization of the hemolysin enzyme produced by Escherichia coli isolated from different sources’, AIP Conference Proceedings, 2398(1), p. 40036. Available at: https://doi.org/10.1063/5.0093763.

Younam, E., Munim, P. and Ali, R. (2017) ‘Determination of Phylogenetic Typing of E.coli isolated from UTIs in many hospitals of Baghdad city’, Journal of University of Babylon [Preprint], (3). Available at: https://www.iasj.net/iasj?func=article&aId=128745.

Basavaraju, M. and Gunashree, B.S. (2023) ‘ Escherichia coli : An Overview of Main Characteristics ’, Escherichia coli - Old and New Insights, (November). Available at: https://doi.org/10.5772/intechopen.105508.

Roy, B., Das, T. and Bhattacharyya, S. (2023) ‘Overview on Old and New Biochemical Test for Bacterial Identification Overview on Old and New Biochemical Test for Bacterial Identification’, (October). Available at: https://doi.org/10.31579/2690-1897/163.

Zeadan, A.M., Saleem, A.J. and Abbas, S.M. (2022) ‘Detection and Analysis of Resistance Genes in Escherichia coli Bacteria Isolated from Children in Baghdad’, Advanced Gut & Microbiome Research, 2022(October), pp. 1–7. Available at: https://doi.org/10.1155/2022/1450019.

Sharma, Amit Raj, Dwij Raj Bhatta, Jyotsna Shrestha, M.R.B. (2013) ‘Antimicrobial Susceptibility Pattern of Escherichia coli Isolated from Urinary Tract Infected Patients Attending Bir Hospital’, Nepal Journal of Science and Technology Vol. 14, No. 1 (2013) 177-184, 14(1), pp. 177–184. Available at: https://doi.org/10.3126/njst.v14i1.8938.

Naqid, I.A. et al. (2020) ‘Antibiotic Susceptibility Pattern of Escherichia coli Isolated from Various Clinical Samples in Duhok City, Kurdistan Region of Iraq’, International Journal of Infection, 7(3). Available at: https://doi.org/10.5812/iji.103740.

Özad Düzgün, A. et al. (2019) ‘Determination of antibiotic resistance genes and virulence factors in Escherichia coli isolated from Turkish patients with urinary tract infection’, Revista da Sociedade Brasileira de Medicina Tropical, 52, pp. 1–5. Available at: https://doi.org/10.1590/0037-8682-0499-2018

Akter, T. et al. (2016) ‘Isolation, identification and antimicrobial susceptibility pattern analysis of Escherichia coli isolated from clinical samples of Bangladesh’, Asian Journal of Biomedical and Pharmaceutical Sciences, 6(54), p. 13. Google scholar.

Anu Monisha, B. et al. (2022) ‘Antibiotic Resistance and Biofilm Development of Escherichia coli on Different Surfaces’, Journal of Pure and Applied Microbiology, 16(3), pp. 1884–1892. Available at: https://doi.org/10.22207/JPAM.16.3.35.

Alkhudhairy, M.K. and Meteab Alshammari, M.M. (2019) ‘Extended spectrum ?-lactamase-producing Escherichia coli isolated from pregnant women with asymptomatic UTI in Iraq’, EurAsian Journal of BioSciences Eurasia J Biosci, 13(January 2019), pp. 1881–1889.

Tayh, G. et al. (2021) ‘Identification of Virulence Factors Among Esbl-Producing Escherichia coli Clinical Isolates From Gaza Strip, Palestine’, Journal of Microbiology, Biotechnology and Food Sciences, 11(3), pp. 1–6. Available at: https://doi.org/10.15414/JMBFS.2865.

Alquraishi, Z.H.O., Alabbasy, A.J. and Alsadawi, A.A. (2018) ‘Genotype and phenotype detection of E. coli isolated from children suffering from urinary tract infection’, Journal of Global Pharma Technology, 10(1), pp. 38–45. Available at: www.jgpt.co.in.

g. nanakali, Z. and F. Ahmad, Z. (2015) ‘Antibiotic Resistance Study and Detection of Virulence Gene among Uropathogenic E.coli’, Kirkuk University Journal-Scientific Studies, 10(3), pp. 205–229. Available at: https://doi.org/10.32894/kujss.2015.104995.

Zaman, H., Zaihd, N., Israr, B., Nayab, M., Habib, M., Ullah, F., Ahmad, W., and Khan, T.A. (2019) ‘Biofilm formation and antimicrobial susceptibility patterns of Escherichia coli isolates from urine samples of “urinary tract infections (UTIs)” patients in “District Kohat, Pakistan.”’, International Journal of Biosciences, 5(6), pp. 240–246. Available at: https://doi.org/10.12692/ijb/15.6.240-246.

Ghavidel, M. et al. (2020) ‘Virulence factors analysis and antibiotic resistance of uropathogenic Escherichia coli isolated from patients in northeast of iran’, Iranian Journal of Microbiology, 12(3), pp. 223–230. Available at: https://doi.org/10.18502/ijm.v12i3.3240.

Mohammad, K.A. et al. (2018) ‘Determination the site of antibiotic resistance genes in Escherichia coli isolated From Urinary Tract Infection’, Kurdistan Journal of Applied Research, 3(2), pp. 6–12. Available at: https://doi.org/10.24017/science.2018.3.2.

AL-Samarraie, M.Q. et al. (2019) ‘The wide spread of the gene haeomolysin (Hly) and the adhesion factor (Sfa) in the E. coli isolated from UTI’, Journal of Pharmaceutical Sciences and Research, 11(4), pp. 1298–1303. Available at: www.jpsr.pharmainfo.in.

Hassuna, N.A. et al. (2020) ‘Molecular characterization of Extended-spectrum ? lactamase- producing E. coli recovered from community-acquired urinary tract infections in Upper Egypt’, Scientific Reports, 10(1), pp. 1–8. Available at: https://doi.org/10.1038/s41598-020-59772-z.

Fattahi1, S. et al. (2015) Relationship of biofilm formation and different virulence genes in uropathogenic Escherichia coli isolates from Northwest Iran. Available at: https://doi.org/10.3205/dgkh000254.

Ramírez Castillo, F.Y. et al. (2023) ‘Biofilm Formation by Escherichia coli Isolated from Urinary Tract Infections from Aguascalientes, Mexico’, Microorganisms, 11(12). Available at: https://doi.org/10.3390/microorganisms11122858.

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2026-04-12

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1.
Kamel SDA, Siham Sh. Al-Salihi. Evaluation of antibiotic resistance and biofilm production in Escherichia coli isolated from clinical samples in Kirkuk city. NTU-JPS [Internet]. 2026 Apr. 12 [cited 2026 Apr. 14];5(1):1-8. Available from: https://journals.ntu.edu.iq/index.php/NTU-JPS/article/view/978

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